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olfm3a olfactomedin 3a [ Danio rerio (zebrafish) ]

Gene ID: 563182, updated on 4-Jan-2025

Summary

Official Symbol
olfm3aprovided by ZNC
Official Full Name
olfactomedin 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080219-11
See related
Ensembl:ENSDARG00000071493 AllianceGenome:ZFIN:ZDB-GENE-080219-11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
olfm3; zgc:171621
Summary
Predicted to be involved in signal transduction. Predicted to be located in extracellular region and synapse. Predicted to be active in extracellular space. Orthologous to human OLFM3 (olfactomedin 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See olfm3a in Genome Data Viewer
Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (28686305..28711176, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (28607146..28632017, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438354 Neighboring gene uncharacterized LOC110438355 Neighboring gene trans-2,3-enoyl-CoA reductase-like 2a Neighboring gene collagen, type XI, alpha 1a Neighboring gene RNA-binding region (RNP1, RRM) containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
noelin-3a
Names
olfactomedin 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111172.1NP_001104642.1  noelin-3a precursor

    See identical proteins and their annotated locations for NP_001104642.1

    Status: PROVISIONAL

    Source sequence(s)
    BC153993
    UniProtKB/TrEMBL
    A8KB73
    Related
    ENSDARP00000096531.4, ENSDART00000105753.5
    Conserved Domains (2) summary
    pfam02191
    Location:201445
    OLF; Olfactomedin-like domain
    pfam12308
    Location:25123
    Noelin-1; Neurogenesis glycoprotein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    28686305..28711176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395181.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    14790..39662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)