U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sdk2b sidekick cell adhesion molecule 2b [ Danio rerio (zebrafish) ]

Gene ID: 564922, updated on 14-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
sdk2bprovided by ZNC
Official Full Name
sidekick cell adhesion molecule 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8203
See related
Ensembl:ENSDARG00000060452 AllianceGenome:ZFIN:ZDB-GENE-030131-8203
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj59h01; wu:fj59h01; si:ch211-160a3.1
Summary
Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules and synapse assembly. Predicted to be located in membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK2 (sidekick cell adhesion molecule 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sdk2b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (37462168..38096218, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (37287428..37921819, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene si:ch211-152f22.4 Neighboring gene CDC42 effector protein (Rho GTPase binding) 4b Neighboring gene uncharacterized LOC137496831 Neighboring gene uncharacterized LOC137496832 Neighboring gene uncharacterized LOC101884792 Neighboring gene uncharacterized LOC137496833

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expression patterns of dscam and sdk gene paralogs in developing zebrafish retina. Galicia CA, et al. Mol Vis, 2018. PMID 30078982, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein sidekick-2
Names
sidekick homolog 2b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    37462168..38096218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306870.4 → XP_009305145.1  protein sidekick-2 isoform X5

    UniProtKB/TrEMBL
    A0A8M3B4U7
    Related
    ENSDARP00000079556.6, ENSDART00000085121.6
    Conserved Domains (6) summary
    smart00408
    Location:69 → 125
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:70 → 136
    IG_like; Immunoglobulin like
    cd00063
    Location:1328 → 1421
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:429 → 519
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:1126 → 1214
    fn3; Fibronectin type III domain
    cl11960
    Location:443 → 519
    Ig; Immunoglobulin domain

  2. XM_009306868.4 → XP_009305143.1  protein sidekick-2 isoform X3

    UniProtKB/TrEMBL
    A0A8M3AYL4
    Conserved Domains (6) summary
    smart00408
    Location:69 → 125
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:70 → 136
    IG_like; Immunoglobulin like
    cd00063
    Location:1328 → 1421
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:429 → 519
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:1126 → 1214
    fn3; Fibronectin type III domain
    cl11960
    Location:443 → 519
    Ig; Immunoglobulin domain

  3. XM_009306869.4 → XP_009305144.1  protein sidekick-2 isoform X4

    UniProtKB/TrEMBL
    A0A8M3B7N2
    Conserved Domains (6) summary
    smart00408
    Location:69 → 125
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:70 → 136
    IG_like; Immunoglobulin like
    cd00063
    Location:1328 → 1421
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:429 → 519
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:1126 → 1214
    fn3; Fibronectin type III domain
    cl11960
    Location:443 → 519
    Ig; Immunoglobulin domain

  4. XM_009306867.4 → XP_009305142.1  protein sidekick-2 isoform X1

    UniProtKB/TrEMBL
    A0A8M3BEB8
    Conserved Domains (6) summary
    smart00408
    Location:69 → 125
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:70 → 136
    IG_like; Immunoglobulin like
    cd00063
    Location:1328 → 1421
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:429 → 519
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:1126 → 1214
    fn3; Fibronectin type III domain
    cl11960
    Location:443 → 519
    Ig; Immunoglobulin domain

  5. XM_021480401.2 → XP_021336076.1  protein sidekick-2 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QJA7
    Related
    ENSDARP00000117666.2, ENSDART00000140353.3
    Conserved Domains (6) summary
    cd00063
    Location:1326 → 1419
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:427 → 517
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:1124 → 1212
    fn3; Fibronectin type III domain
    pfam13927
    Location:240 → 311
    Ig_3; Immunoglobulin domain
    cd00096
    Location:351 → 419
    Ig; Immunoglobulin domain
    cl28434
    Location:522 → 611
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools