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rspry1 ring finger and SPRY domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 565154, updated on 9-Dec-2024

Summary

Official Symbol
rspry1provided by ZNC
Official Full Name
ring finger and SPRY domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-061026-2
See related
Ensembl:ENSDARG00000062558 AllianceGenome:ZFIN:ZDB-GENE-061026-2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-257c9.1
Summary
Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human RSPRY1 (ring finger and SPRY domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See rspry1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17725630..17751845)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17736564..17762779)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene copine II Neighboring gene proteasome activator subunit 3 interacting protein 1 Neighboring gene si:ch211-216l23.2 Neighboring gene uncharacterized LOC101885646 Neighboring gene zinc finger protein 423

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
RING finger and SPRY domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045072.2NP_001038537.2  RING finger and SPRY domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_001038537.2

    Status: PROVISIONAL

    Source sequence(s)
    BC134970
    UniProtKB/TrEMBL
    A4IG82
    Related
    ENSDARP00000085041.5, ENSDART00000090608.6
    Conserved Domains (2) summary
    pfam13920
    Location:527572
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    cd12883
    Location:363483
    SPRY_RING; SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    17725630..17751845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395019.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    693..7344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)