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cped1 cadherin-like and PC-esterase domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 565332, updated on 2-Nov-2024

Summary

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Official Symbol
cped1provided by ZNC
Official Full Name
cadherin-like and PC-esterase domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-247
See related
Ensembl:ENSDARG00000045747 AllianceGenome:ZFIN:ZDB-GENE-041210-247
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-152m4.1
Summary
Orthologous to human CPED1 (cadherin like and PC-esterase domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See cped1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (10617061..10705422)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (10617989..10706704)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 12 Neighboring gene inhibitor of growth family, member 3 Neighboring gene wingless-type MMTV integration site family, member 16 Neighboring gene si:dkey-207j16.5 Neighboring gene stabilin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. wnt16 regulates spine and muscle morphogenesis through parallel signals from notochord and dermomyotome. Watson CJ, et al. PLoS Genet, 2022 Nov. PMID 36346812, Free PMC Article
  2. A morpholino-based screen to identify novel genes involved in craniofacial morphogenesis. Melvin VS, et al. Dev Dyn, 2013 Jul. PMID 23559552, Free PMC Article
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C7orf58; cadherin-like and PC-esterase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    10617061..10705422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068220747.1 → XP_068076848.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X1

    Related
    ENSDARP00000067250.4, ENSDART00000067251.6

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394551.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    18304..36383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471532.1 → XP_021327207.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P8P4
Nucleotide Protein Strain
Heading Accession and Version

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