U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:ch211-114l13.1 si:ch211-114l13.1 [ Danio rerio (zebrafish) ]

Gene ID: 566121, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
si:ch211-114l13.1provided by ZNC
Official Full Name
si:ch211-114l13.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-070424-109
See related
Ensembl:ENSDARG00000093323 AllianceGenome:ZFIN:ZDB-GENE-070424-109
Gene type
unknown
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and urticaria. Orthologous to several human genes including NLRP12 (NLR family pyrin domain containing 12); NLRP13 (NLR family pyrin domain containing 13); and NLRP14 (NLR family pyrin domain containing 14). [provided by Alliance of Genome Resources, Nov 2024]

Genomic context

Go to the top of the page Help
See si:ch211-114l13.1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (58092579..58105221)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (57355977..57367443)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene NLR family, CARD domain containing 10 Neighboring gene si:ch211-114l13.13 Neighboring gene caspase b, like Neighboring gene si:ch211-15j1.5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Other Names

  • NOD-like receptor C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    58092579..58105221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011016134.1 RNA Sequence

    Related
    ENSDART00000144190.4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools