U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nopchap1 NOP protein chaperone 1 [ Danio rerio (zebrafish) ]

Gene ID: 566307, updated on 14-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
nopchap1provided by ZNC
Official Full Name
NOP protein chaperone 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-100427-1
See related
Ensembl:ENSDARG00000077926 AllianceGenome:ZFIN:ZDB-GENE-100427-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gb:bc115184; si:dkey-48p11.3
Summary
Predicted to enable box C/D methylation guide snoRNP complex binding activity. Predicted to be involved in box C/D snoRNP assembly. Orthologous to human NOPCHAP1 (NOP protein chaperone 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nopchap1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (9051588..9054920, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (9050672..9054004, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene sorting and assembly machinery component 50 homolog, like Neighboring gene aldehyde dehydrogenase 1 family, member L2 Neighboring gene solute carrier family 41 member 2b Neighboring gene carbohydrate (chondroitin 4) sulfotransferase 11

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within box C/D snoRNP assembly IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
NOP protein chaperone 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201412.1 → NP_001188341.1  NOP protein chaperone 1

    Status: PROVISIONAL

    Source sequence(s)
    BC083211
    UniProtKB/TrEMBL
    A0A8M1P1M8
    Related
    ENSDARP00000098368.3, ENSDART00000109764.4
    Conserved Domains (1) summary
    pfam15370
    Location:50 → 97
    DUF4598; Domain of unknown function (DUF4598)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    9051588..9054920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools