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hoatz HOATZ cilia and flagella associated protein [ Danio rerio (zebrafish) ]

Gene ID: 566423, updated on 4-Jan-2025

Summary

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Official Symbol
hoatzprovided by ZNC
Official Full Name
HOATZ cilia and flagella associated proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-453
See related
Ensembl:ENSDARG00000075714 AllianceGenome:ZFIN:ZDB-GENE-070705-453
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-27p23.3
Summary
Predicted to act upstream of or within cilium assembly. Predicted to be located in cilium and cytoplasm. Orthologous to human HOATZ (HOATZ cilia and flagella associated protein). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See hoatz in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (57901168..57921139, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (57230951..57251343, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene salt-inducible kinase 2a Neighboring gene layilin a Neighboring gene microRNA 34c Neighboring gene microRNA 34b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within cilium assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cilium ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cilia- and flagella-associated protein HOATZ
Names
UPF0722 protein C11orf88 homolog
protein Hoatz homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100021.2 → NP_001093491.2  cilia- and flagella-associated protein HOATZ

    See identical proteins and their annotated locations for NP_001093491.2

    Status: VALIDATED

    Source sequence(s)
    BX950179
    UniProtKB/Swiss-Prot
    A5PN52
    Related
    ENSDARP00000122168.1, ENSDART00000132376.3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    57901168..57921139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221265.1 → XP_068077366.1  cilia- and flagella-associated protein HOATZ isoform X2

    UniProtKB/TrEMBL
    A0A8M6YYA3

  2. XM_009301860.4 → XP_009300135.1  cilia- and flagella-associated protein HOATZ isoform X1

    UniProtKB/TrEMBL
    A0A8M3B9Y1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394617.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    90358..110329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A5PN52.1 GenPept UniProtKB/Swiss-Prot:A5PN52

Gene LinkOut

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