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si:ch211-14k19.8 si:ch211-14k19.8 [ Danio rerio (zebrafish) ]

Gene ID: 567378, updated on 28-Oct-2024

Summary

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Official Symbol
si:ch211-14k19.8provided by ZNC
Official Full Name
si:ch211-14k19.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-051214-4
See related
Ensembl:ENSDARG00000088975 AllianceGenome:ZFIN:ZDB-GENE-051214-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
VAP; ns:073-h07-2
Orthologs
all
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Genomic context

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See si:ch211-14k19.8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (9100447..9115036, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (8416275..8430918, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene protein kinase C, beta a Neighboring gene calcium channel, voltage-dependent, gamma subunit 3a Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1a Neighboring gene partner and localizer of BRCA2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Mutant-specific gene programs in the zebrafish. Weber GJ, et al. Blood, 2005 Jul 15. PMID 15827125, Free PMC Article
  2. Vap (Vascular Associated Protein): a novel factor involved in erythropoiesis and angiogenesis. Kawahara A, et al. Biochem Biophys Res Commun, 2012 May 4. PMID 22510405, Free PMC Article
  3. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Vap plays an important role in the maturation of endothelial and erythroid cells in zebrafish.
    Title: Vap (Vascular Associated Protein): a novel factor involved in erythropoiesis and angiogenesis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
serine-rich adhesin for platelets; si:ch211-14k19.8; uncharacterized protein si:ch211-14k19.8
Names
vascular associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    9100447..9115036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068220996.1 → XP_068077097.1  serine-rich adhesin for platelets isoform X2

  2. XM_003197620.5 → XP_003197668.2  serine-rich adhesin for platelets isoform X1

    UniProtKB/TrEMBL
    A0A0R4IU71, A0A8M1RLK4
    Related
    ENSDARP00000139610.2, ENSDART00000163624.2
    Conserved Domains (1) summary
    pfam00008
    Location:967 → 993
    EGF; EGF-like domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394461.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    207515..223280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471111.2 → XP_021326786.1  uncharacterized protein si:ch211-14k19.8 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PWZ2
    Conserved Domains (2) summary
    pfam00008
    Location:960 → 986
    EGF; EGF-like domain
    cl25496
    Location:280 → 553
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein Strain
Heading Accession and Version

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