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rbm44 RNA binding motif protein 44 [ Danio rerio (zebrafish) ]

Gene ID: 567482, updated on 2-Nov-2024

Summary

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Official Symbol
rbm44provided by ZNC
Official Full Name
RNA binding motif protein 44provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5562
See related
Ensembl:ENSDARG00000069758 AllianceGenome:ZFIN:ZDB-GENE-030131-5562
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi04c05; wu:fi04c05; si:dkey-89p3.3; si:dkey-189g17.2
Summary
Predicted to enable protein homodimerization activity. Predicted to be located in cytoplasm and intercellular bridge. Orthologous to human RBM44 (RNA binding motif protein 44). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See rbm44 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (22656952..22672828)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (22846340..22861959)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase beta-like Neighboring gene ETS variant transcription factor 5a Neighboring gene integrin, beta 5 Neighboring gene tumor necrosis factor, alpha-induced protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Germline-Specific Regulator of Mitochondrial Fusion is Required for Maintenance and Differentiation of Germline Stem and Progenitor Cells. Zhang R, et al. Adv Sci (Weinh), 2022 Dec. PMID 36257818, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in intercellular bridge ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
RNA-binding protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128542.1 → NP_001122014.1  RNA-binding protein 44

    See identical proteins and their annotated locations for NP_001122014.1

    Status: PROVISIONAL

    Source sequence(s)
    BX548053, CR391951
    UniProtKB/Swiss-Prot
    B0S6S9
    Related
    ENSDARP00000092541.3, ENSDART00000101765.4
    Conserved Domains (1) summary
    cd00590
    Location:752 → 819
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    22656952..22672828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068223446.1 → XP_068079547.1  RNA-binding protein 44 isoform X3

  2. XM_068223444.1 → XP_068079545.1  RNA-binding protein 44 isoform X1

  3. XM_068223445.1 → XP_068079546.1  RNA-binding protein 44 isoform X2

  4. XM_068223447.1 → XP_068079548.1  RNA-binding protein 44 isoform X4

  5. XM_068223449.1 → XP_068079550.1  RNA-binding protein 44 isoform X6

  6. XM_068223448.1 → XP_068079549.1  RNA-binding protein 44 isoform X5

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394751.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    469896..484793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395279.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    194065..207000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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