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atrxl ATRX chromatin remodeler, like [ Danio rerio (zebrafish) ]

Gene ID: 568580, updated on 4-Jan-2025

Summary

Official Symbol
atrxlprovided by ZNC
Official Full Name
ATRX chromatin remodeler, likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2019
See related
Ensembl:ENSDARG00000099449 AllianceGenome:ZFIN:ZDB-GENE-030131-2019
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb94e07
Summary
Human ortholog(s) of this gene implicated in X-linked mental retardation-hypotonic facies syndrome-1; alpha thalassemia-X-linked intellectual disability syndrome; alpha-thalassemia myelodysplasia syndrome; high grade glioma; and lung small cell carcinoma. Orthologous to human ATRX (ATRX chromatin remodeler). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See atrxl in Genome Data Viewer
Location:
chromosome: 5
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (23044946..23083932)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 1B Neighboring gene cyclic nucleotide gated channel subunit alpha 2b Neighboring gene zinc finger DHHC-type palmitoyltransferase 15a Neighboring gene uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) Neighboring gene neurite extension and migration factor a

Genomic regions, transcripts, and products

General protein information

Preferred Names
ATRX chromatin remodeler, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423350.1NP_001410279.1  ATRX chromatin remodeler, like

    Status: VALIDATED

    Source sequence(s)
    CR762398

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    23044946..23083932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221280.1XP_068077381.1  ATRX chromatin remodeler, like isoform X2

  2. XM_068221279.1XP_068077380.1  ATRX chromatin remodeler, like isoform X1

    Related
    ENSDARP00000137092.1, ENSDART00000171719.2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394574.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    261439..300435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)