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lactbl1a lactamase, beta-like 1a [ Danio rerio (zebrafish) ]

Gene ID: 568717, updated on 9-Dec-2024

Summary

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Official Symbol
lactbl1aprovided by ZNC
Official Full Name
lactamase, beta-like 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7625
See related
Ensembl:ENSDARG00000089063 AllianceGenome:ZFIN:ZDB-GENE-030131-7625
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fk56c03; wu:fk56c03; si:dkey-68l7.3
Summary
Orthologous to human LACTBL1 (lactamase beta like 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See lactbl1a in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (21964342..21974820)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (22037777..22048279)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489120 Neighboring gene leucine rich repeat containing 38a Neighboring gene eph receptor B2a Neighboring gene uncharacterized LOC103909685 Neighboring gene eukaryotic translation initiation factor 4 gamma, 3b Neighboring gene polyhomeotic homolog 2a (Drosophila)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
putative beta-lactamase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    21964342..21974820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469952.2 → XP_021325627.1  putative beta-lactamase-like 1

    UniProtKB/TrEMBL
    A0A8M9PE02, E7FAI4
    Conserved Domains (1) summary
    pfam00144
    Location:76 → 420
    Beta-lactamase; Beta-lactamase

  2. XM_021469951.2 → XP_021325626.1  putative beta-lactamase-like 1

    UniProtKB/TrEMBL
    A0A8M9PE02, E7FAI4
    Related
    ENSDARP00000117327.1, ENSDART00000135690.2
    Conserved Domains (1) summary
    pfam00144
    Location:76 → 420
    Beta-lactamase; Beta-lactamase

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395145.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    434566..445044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473663.2 → XP_021329338.1  putative beta-lactamase-like 1

    UniProtKB/TrEMBL
    A0A8M9PE02, E7FAI4
    Conserved Domains (1) summary
    pfam00144
    Location:76 → 420
    Beta-lactamase; Beta-lactamase

  2. XM_021473662.2 → XP_021329337.1  putative beta-lactamase-like 1

    UniProtKB/TrEMBL
    A0A8M9PE02, E7FAI4
    Conserved Domains (1) summary
    pfam00144
    Location:76 → 420
    Beta-lactamase; Beta-lactamase

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395362.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    122711..133205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009296896.3 → XP_009295171.2  putative beta-lactamase-like 1

    UniProtKB/TrEMBL
    A0A8M3AVF4
    Conserved Domains (1) summary
    pfam00144
    Location:76 → 420
    Beta-lactamase

  2. XM_009296895.4 → XP_009295170.2  putative beta-lactamase-like 1

    UniProtKB/TrEMBL
    A0A8M3AVF4
    Conserved Domains (1) summary
    pfam00144
    Location:76 → 420
    Beta-lactamase
Nucleotide Protein Strain
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