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tecpr2 tectonin beta-propeller repeat containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 569212, updated on 9-Dec-2024

Summary

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Official Symbol
tecpr2provided by ZNC
Official Full Name
tectonin beta-propeller repeat containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-358
See related
Ensembl:ENSDARG00000060835 AllianceGenome:ZFIN:ZDB-GENE-060503-358
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-46n18.5
Summary
Predicted to be involved in protein exit from endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 49. Orthologous to human TECPR2 (tectonin beta-propeller repeat containing 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See tecpr2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (29282164..29312476, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (29265946..29295520, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene REST corepressor 1 Neighboring gene ankyrin repeat domain 9 Neighboring gene uncharacterized LOC137488109 Neighboring gene protein tyrosine phosphatase receptor type Eb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in protein exit from endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
tectonin beta-propeller repeat-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045179.1 → NP_001038644.1  tectonin beta-propeller repeat-containing protein 2

    Status: PROVISIONAL

    Source sequence(s)
    AL845481
    UniProtKB/TrEMBL
    A0A8N7UYB3, F1QYC9
    Related
    ENSDARP00000094999.5, ENSDART00000104224.5
    Conserved Domains (2) summary
    COG2319
    Location:35 → 363
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:1179 → 1207
    Hyd_WA; Propeller

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    29282164..29312476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158791.5 → XP_005158848.1  tectonin beta-propeller repeat-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B5A0, F6P3V2
    Related
    ENSDARP00000121461.2, ENSDART00000133668.4
    Conserved Domains (2) summary
    COG2319
    Location:35 → 369
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:1229 → 1257
    Hyd_WA; Propeller
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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