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si:ch73-174h16.4 si:ch73-174h16.4 [ Danio rerio (zebrafish) ]

Gene ID: 569854, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch73-174h16.4provided by ZNC
Official Full Name
si:ch73-174h16.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-160728-69
See related
Ensembl:ENSDARG00000036493 AllianceGenome:ZFIN:ZDB-GENE-160728-69
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in cytoplasm. Orthologous to human LRRC14 (leucine rich repeat containing 14). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch73-174h16.4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (40093675..40102078)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (39822660..39830931)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene sortilin-related VPS10 domain containing receptor 2 Neighboring gene sharpin and rbck1 related Neighboring gene si:ch73-174h16.5 Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III b Neighboring gene dynein 2 intermediate chain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    40093675..40102078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_693265.9 → XP_698357.3  leucine-rich repeat-containing protein 14

    UniProtKB/TrEMBL
    A0A8N7TEM8, E7F4Y9
    Related
    ENSDARP00000053010.5, ENSDART00000053011.8
    Conserved Domains (2) summary
    cd00116
    Location:322 → 500
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:385 → 411
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
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