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clec3ba C-type lectin domain family 3, member Ba [ Danio rerio (zebrafish) ]

Gene ID: 572488, updated on 4-Jan-2025

Summary

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Official Symbol
clec3baprovided by ZNC
Official Full Name
C-type lectin domain family 3, member Baprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110411-71
See related
Ensembl:ENSDARG00000076541 AllianceGenome:ZFIN:ZDB-GENE-110411-71
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
clec3b; si:dkey-288i20.3
Summary
Human ortholog(s) of this gene implicated in osteoarthritis and retinal macular dystrophy 4. Orthologous to human CLEC3B (C-type lectin domain family 3 member B). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See clec3ba in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (2833455..2844199)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (2595794..2606533)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 2 Neighboring gene acyl-CoA thioesterase 22 Neighboring gene fasciculation and elongation protein zeta 2a Neighboring gene CUB domain containing protein 1a Neighboring gene transmembrane protein 158

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
tetranectin
Names
C-type lectin domain family 3, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    2833455..2844199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466804.2 → XP_021322479.2  tetranectin

    UniProtKB/TrEMBL
    A0A8M9PDC0
    Related
    ENSDARP00000098343.2, ENSDART00000108735.3
Nucleotide Protein Strain
Heading Accession and Version

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