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Pwwp4a PWWP domain containing 4A [ Mus musculus (house mouse) ]

Gene ID: 574404, updated on 8-Feb-2024

Summary

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Official Symbol
Pwwp4aprovided by MGI
Official Full Name
PWWP domain containing 4Aprovided by MGI
Primary source
MGI:MGI:3710618
See related
Ensembl:ENSMUSG00000067771 AllianceGenome:MGI:3710618
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm14685
Expression
Biased expression in placenta adult (RPKM 8.0), testis adult (RPKM 1.5) and 2 other tissues See more
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Genomic context

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See Pwwp4a in Genome Data Viewer
Location:
X A7.3; X 37.29 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (72160636..72172875)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (73117030..73129269)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene X-linked lymphocyte-regulated 4A Neighboring gene X-linked lymphocyte-regulated 3A Neighboring gene X-linked lymphocyte-regulated 5A Neighboring gene PWWP domain containing 4B Neighboring gene X-linked lymphocyte-regulated 5B Neighboring gene STARR-seq mESC enhancer starr_47342 Neighboring gene STARR-seq mESC enhancer starr_47343 Neighboring gene spindlin family, member 2D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC106740

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC574404

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025383.2 → NP_001020554.1  uncharacterized protein LOC574404

    See identical proteins and their annotated locations for NP_001020554.1

    Status: VALIDATED

    Source sequence(s)
    BX813330
    Consensus CDS
    CCDS53093.1
    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    72160636..72172875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528188.3 → XP_006528251.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528251.1

    UniProtKB/TrEMBL
    Q52KH6
    Related
    ENSMUSP00000085806.3, ENSMUST00000088459.9
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  2. XM_006528182.4 → XP_006528245.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528245.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  3. XM_006528186.3 → XP_006528249.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528249.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  4. XM_006528185.2 → XP_006528248.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528248.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  5. XM_006528187.2 → XP_006528250.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528250.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  6. XM_006528181.2 → XP_006528244.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528244.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  7. XM_006528190.2 → XP_006528253.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528253.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  8. XM_006528184.3 → XP_006528247.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528247.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  9. XM_006528183.3 → XP_006528246.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528246.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  10. XM_006528189.3 → XP_006528252.1  uncharacterized protein LOC574404 isoform X1

    See identical proteins and their annotated locations for XP_006528252.1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

  11. XM_036162052.1 → XP_036017945.1  uncharacterized protein LOC574404 isoform X1

    UniProtKB/TrEMBL
    Q52KH6
    Conserved Domains (1) summary
    cd06080
    Location:380 → 459
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...
Nucleotide Protein Strain
Heading Accession and Version

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