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pdc1 protein pdc1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 5802967, updated on 18-Sep-2024

Summary

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Official Symbol
pdc1
Official Full Name
protein pdc1
Primary source
PomBase:SPAC20G4.08
Locus tag
SPOM_SPAC20G4.08
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC4F10.01
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Genomic context

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See pdc1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (4828900..4832473)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene cofilin Neighboring gene C-24(28) sterol reductase Erg4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene aspartyl metalloaminopeptidase Ape4 Neighboring gene ncRNA Neighboring gene tRNA 2'-O-ribose methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In vitro reconstitution of a cellular phase-transition process that involves the mRNA decapping machinery. Fromm SA, et al. Angew Chem Int Ed Engl, 2014 Jul 7. PMID 24862735, Free PMC Article
  2. Pdc1 functions in the assembly of P bodies in Schizosaccharomyces pombe. Wang CY, et al. Mol Cell Biol, 2013 Mar. PMID 23319050, Free PMC Article
  3. Fission Yeast Puf2, a Pumilio and FBF Family RNA-Binding Protein, Links Stress Granules to Processing Bodies. Hsiao WY, et al. Mol Cell Biol, 2020 Apr 13. PMID 32071154, Free PMC Article
  4. Nucleocytoplasmic transport in the midzone membrane domain controls yeast mitotic spindle disassembly. Lucena R, et al. J Cell Biol, 2015 May 11. PMID 25963819, Free PMC Article
  5. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular adaptor activity EXP
Inferred from Experiment
more info
 PubMed 
enables molecular condensate scaffold activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in P-body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytoplasm HDA PubMed 
is_active_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
protein pdc1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4828900..4832473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001356184.2 → NP_001342843.1  protein pdc1 [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13892, O36013
    Conserved Domains (2) summary
    pfam16529
    Location:257 → 433
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    cl25508
    Location:759 → 886
    Spc7; Spc7 kinetochore protein
Nucleotide Protein
Heading Accession and Version

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