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trpc4apb transient receptor potential cation channel, subfamily C, member 4 associated protein b [ Danio rerio (zebrafish) ]

Gene ID: 58089, updated on 2-Nov-2024

Summary

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Official Symbol
trpc4apbprovided by ZNC
Official Full Name
transient receptor potential cation channel, subfamily C, member 4 associated protein bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000330-2
See related
Ensembl:ENSDARG00000020647 AllianceGenome:ZFIN:ZDB-GENE-000330-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tap1b; fa04g10; wu:fa04g10
Summary
Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Orthologous to human TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: suggests misassembly
Orthologs
all
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Genomic context

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See trpc4apb in Genome Data Viewer
Location:
chromosome: 23
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (18759535..18777950, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (18833195..18851608, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zgc:103759 Neighboring gene myosin, heavy chain 7B, cardiac muscle, beta b Neighboring gene epithelial membrane protein 3b (MAM blood group) Neighboring gene NSFL1 (p97) cofactor (p47)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution and Distribution of Teleost myomiRNAs: Functionally Diversified myomiRs in Teleosts. Siddique BS, et al. Mar Biotechnol (NY), 2016 Jun. PMID 27262998
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Cul4A-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transient receptor potential cation channel, subfamily C, member 4 associated protein b
Names
trp4-associated protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310093.1 → NP_001297022.1  transient receptor potential cation channel, subfamily C, member 4 associated protein b

    Status: VALIDATED

    Source sequence(s)
    BC162514
    UniProtKB/TrEMBL
    A0A8M1P2D2
    Related
    ENSDARP00000133409.1, ENSDART00000169180.2
    Conserved Domains (1) summary
    pfam12463
    Location:382 → 689
    DUF3689; Protein of unknown function (DUF3689)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    18759535..18777950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353602.3 → XP_017209091.1  transient receptor potential cation channel, subfamily C, member 4 associated protein b isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z4G5

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_131568.1: Suppressed sequence

    Description
    NM_131568.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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