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Potefam3e POTE ankyrin domain family member 3E [ Mus musculus (house mouse) ]

Gene ID: 626415, updated on 9-Dec-2024

Summary

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Official Symbol
Potefam3eprovided by MGI
Official Full Name
POTE ankyrin domain family member 3Eprovided by MGI
Primary source
MGI:MGI:1923056
See related
Ensembl:ENSMUSG00000096265 AllianceGenome:MGI:1923056
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TSAP; Pote3e; 4930467E23Rik
Summary
Orthologous to human POTEJ (POTE ankyrin domain family member J). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in testis adult (RPKM 14.0), frontal lobe adult (RPKM 3.8) and 22 other tissues See more
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Genomic context

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See Potefam3e in Genome Data Viewer
Location:
8 A1.3; 8 10.35 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (19754327..19803619)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (19704311..19753603)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35998 Neighboring gene predicted gene, 29789 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19683498-19683799 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19686031-19686332 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19686651-19686952 Neighboring gene STARR-seq mESC enhancer starr_20869 Neighboring gene cadherin 11 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:19708792-19709092 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19716263-19716564 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19718186-19718486 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19720998-19721298 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene predicted gene, 53404 Neighboring gene STARR-positive B cell enhancer ABC_E3770 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification and characterization of TSAP, a novel gene specifically expressed in testis during spermatogenesis. Bin L, et al. Mol Reprod Dev, 2007 Sep. PMID 17342726
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TSAP protein likely plays a role in spermatogenesis.
    Title: Identification and characterization of TSAP, a novel gene specifically expressed in testis during spermatogenesis.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
testis-specific gene with ankyrin repeats and PEST domain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039553.2 → NP_001034642.2  testis-specific gene with ankyrin repeats and PEST domain

    Status: VALIDATED

    Source sequence(s)
    AC148089
    Consensus CDS
    CCDS52498.1
    UniProtKB/TrEMBL
    B9EK96, D3Z1P8
    Related
    ENSMUSP00000096508.4, ENSMUST00000098909.5
    Conserved Domains (4) summary
    cd00204
    Location:79 → 203
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:89 → 180
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:54 → 105
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:86 → 115
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    19754327..19803619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312928.1 → XP_017168417.1  testis-specific gene with ankyrin repeats and PEST domain isoform X1

    UniProtKB/TrEMBL
    Q9D5C0
    Conserved Domains (2) summary
    sd00045
    Location:74 → 103
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:77 → 168
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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