The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference assembly

Genomic

1. NC_010820.1 Reference assembly

   Range

   3704..7135

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. YP_001956722.2 Pol precursor [African green monkey simian foamy virus]

   See identical proteins and their annotated locations for YP_001956722.2

   Status: PROVISIONAL

   UniProtKB/Swiss-Prot

   P27401

   Conserved Domains (6) summary

   pfam03539
   Location:14 → 176

   Spuma_A9PTase; Spumavirus aspartic protease (A9)

   COG2801
   Location:831 → 976

   Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]

   pfam00078
   Location:205 → 363

   RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)

   pfam00665
   Location:871 → 979

   rve; Integrase core domain

   cl02808
   Location:165 → 361

   RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

   cl14782
   Location:597 → 747

   RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8