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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_010820.1 Reference assembly
- Range
-
3704..7135
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_001956722.2 Pol precursor [African green monkey simian foamy virus]
See identical proteins and their annotated locations for YP_001956722.2
Status: PROVISIONAL
- UniProtKB/Swiss-Prot
-
P27401
- Conserved Domains (6) summary
-
- pfam03539
Location:14 → 176
- Spuma_A9PTase; Spumavirus aspartic protease (A9)
- COG2801
Location:831 → 976
- Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]
- pfam00078
Location:205 → 363
- RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
- pfam00665
Location:871 → 979
- rve; Integrase core domain
- cl02808
Location:165 → 361
- RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
- cl14782
Location:597 → 747
- RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8