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KRT16P3 keratin 16 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 644945, updated on 17-Sep-2024

Summary

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Official Symbol
KRT16P3provided by HGNC
Official Full Name
keratin 16 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:37808
See related
Ensembl:ENSG00000291196 AllianceGenome:HGNC:37808
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KERSMCR
Expression
Biased expression in esophagus (RPKM 10.2), skin (RPKM 2.1) and 1 other tissue See more
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Genomic context

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See KRT16P3 in Genome Data Viewer
Location:
17p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20501513..20504498, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20450179..20453164, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20404826..20407811, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 3 Neighboring gene keratin 16 pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20405227-20405727 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20406945-20407530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20408115-20408700 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20408701-20409284 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20409871-20410454 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20410455-20411040 Neighboring gene proximal SMS-REP block C recombination region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20418042-20418841 Neighboring gene keratin 17 pseudogene 6 Neighboring gene keratin 17 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • MGC102966

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029393.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015818, BC110641, DB013784
    Related
    ENST00000580621.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20501513..20504498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20450179..20453164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_007162.2: Suppressed sequence

    Description
    NG_007162.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

  2. NG_026155.1: Suppressed sequence

    Description
    NG_026155.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein
Heading Accession and Version

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