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Rtl8a retrotransposon Gag like 8A [ Mus musculus (house mouse) ]

Gene ID: 66158, updated on 2-Nov-2024

Summary

Official Symbol
Rtl8aprovided by MGI
Official Full Name
retrotransposon Gag like 8Aprovided by MGI
Primary source
MGI:MGI:1913408
See related
Ensembl:ENSMUSG00000067925 AllianceGenome:MGI:1913408
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cxx1a; Mart8b; Mar8.2A/B; 1110012O05Rik
Summary
Is expressed in metanephros; nervous system; and neural retina. Orthologous to several human genes including RTL8A (retrotransposon Gag like 8A) and RTL8B (retrotransposon Gag like 8B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Rtl8a in Genome Data Viewer
Location:
X A5; X 29.87 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52644455..52645730, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53642488..53643763, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene splicing factor 3a, subunit 3 pseudogene Neighboring gene centromere protein K pseudogene Neighboring gene retrotransposon Gag like 8B Neighboring gene 53064

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
mammalian retrotransposon derived 8b
Names
CAAX box 1 homolog A
CAAX box 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024170.2NP_077132.1  mammalian retrotransposon derived 8b

    See identical proteins and their annotated locations for NP_077132.1

    Status: VALIDATED

    Source sequence(s)
    AL807398
    Consensus CDS
    CCDS30134.1
    UniProtKB/TrEMBL
    Q9D1F0
    Related
    ENSMUSP00000086158.4, ENSMUST00000088779.5
    Conserved Domains (1) summary
    pfam16297
    Location:26113
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    52644455..52645730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)