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Chchd5 coiled-coil-helix-coiled-coil-helix domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 66170, updated on 9-Dec-2024

Summary

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Official Symbol
Chchd5provided by MGI
Official Full Name
coiled-coil-helix-coiled-coil-helix domain containing 5provided by MGI
Primary source
MGI:MGI:1913420
See related
Ensembl:ENSMUSG00000037938 AllianceGenome:MGI:1913420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110027L01Rik
Summary
Predicted to be involved in cellular respiration. Predicted to be active in mitochondrial intermembrane space. Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; cortical plate; orbito-sphenoid; and turbinate bone primordium. Orthologous to human CHCHD5 (coiled-coil-helix-coiled-coil-helix domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 37.7), liver adult (RPKM 19.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Chchd5 in Genome Data Viewer
Location:
2 F1; 2 62.72 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (128971620..128976032)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (129129700..129134112)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase Neighboring gene predicted gene, 46764 Neighboring gene polymerase (RNA) I polypeptide B Neighboring gene SET domain containing 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_05661 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:129005758-129006030 Neighboring gene expressed sequence AI847159

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellular respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial intermembrane space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil-helix-coiled-coil-helix domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025395.3 → NP_079671.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 5

    See identical proteins and their annotated locations for NP_079671.1

    Status: VALIDATED

    Source sequence(s)
    AK013018, BB792161, BY335381, W41426
    Consensus CDS
    CCDS16721.1
    UniProtKB/Swiss-Prot
    Q9CQP3
    UniProtKB/TrEMBL
    Q52KC5
    Related
    ENSMUSP00000044253.5, ENSMUST00000035481.5
    Conserved Domains (2) summary
    pfam06747
    Location:58 → 92
    CHCH; CHCH domain
    pfam16860
    Location:8 → 49
    CX9C; CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    128971620..128976032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CQP3.1 GenPept UniProtKB/Swiss-Prot:Q9CQP3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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