U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

1110059E24Rik RIKEN cDNA 1110059E24 gene [ Mus musculus (house mouse) ]

Gene ID: 66206, updated on 9-Dec-2024

Summary

Official Symbol
1110059E24Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110059E24 geneprovided by MGI
Primary source
MGI:MGI:1913456
See related
Ensembl:ENSMUSG00000035171 AllianceGenome:MGI:1913456
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C9orf85 (chromosome 9 open reading frame 85). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in CNS E11.5 (RPKM 13.8), bladder adult (RPKM 13.6) and 23 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 1110059E24Rik in Genome Data Viewer
Location:
19 B; 19 15.54 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (21574677..21630155, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (21597313..21652791, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3443 Neighboring gene predicted gene, 38486 Neighboring gene STARR-seq mESC enhancer starr_45727 Neighboring gene STARR-positive B cell enhancer mm9_chr19:21727198-21727499 Neighboring gene abhydrolase domain containing 17B Neighboring gene STARR-positive B cell enhancer mm9_chr19:21788111-21788412 Neighboring gene predicted gene, 41818

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C9orf85 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025423.2NP_079699.1  uncharacterized protein C9orf85 homolog

    See identical proteins and their annotated locations for NP_079699.1

    Status: PROVISIONAL

    Source sequence(s)
    AK004308
    Consensus CDS
    CCDS29699.1
    UniProtKB/Swiss-Prot
    Q9CQ90
    Related
    ENSMUSP00000048395.4, ENSMUST00000038830.10
    Conserved Domains (1) summary
    pfam10217
    Location:14102
    DUF2039; Uncharacterized conserved protein (DUF2039)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    21574677..21630155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)