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Pantr1 POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 [ Mus musculus (house mouse) ]

Gene ID: 66297, updated on 9-Dec-2024

Summary

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Official Symbol
Pantr1provided by MGI
Official Full Name
POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1provided by MGI
Primary source
MGI:MGI:1913547
See related
AllianceGenome:MGI:1913547
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pou3f3os; linc-Brn1a; 2610017I09Rik
Summary
Acts upstream of or within regulation of gene expression. Is expressed in brain. Orthologous to human PANTR1 (POU3F3 adjacent non-coding transcript 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in CNS E14 (RPKM 34.6), CNS E11.5 (RPKM 34.2) and 7 other tissues See more
Orthologs
human all
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Genomic context

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See Pantr1 in Genome Data Viewer
Location:
1 B; 1 21.08 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (42687360..42733985, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (42648200..42694825, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46089 Neighboring gene predicted gene, 36822 Neighboring gene predicted gene 20646 Neighboring gene RIKEN cDNA 2900092D14 gene Neighboring gene POU domain, class 3, transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons. Chevée M, et al. Cell Rep, 2018 Jan 9. PMID 29320739, Free PMC Article
  2. Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain. Goff LA, et al. Proc Natl Acad Sci U S A, 2015 Jun 2. PMID 26034286, Free PMC Article
  3. Spatial and temporal analysis of gene expression during growth and fusion of the mouse facial prominences. Feng W, et al. PLoS One, 2009 Dec 16. PMID 20016822, Free PMC Article
  4. Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. Lai KM, et al. PLoS One, 2015. PMID 25909911, Free PMC Article
  5. Single-cell transcriptomic signatures and gene regulatory networks modulated by Wls in mammalian midline facial formation and clefts. Gu R, et al. Development, 2022 Jul 15. PMID 35781558, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Other Names

  • POU domain, class 3, transcription factor 3, opposite strand

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027826.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122898

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    42687360..42733985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_183252.1: Suppressed sequence

    Description
    NM_183252.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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