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si:ch73-130a3.4 si:ch73-130a3.4 [ Danio rerio (zebrafish) ]

Gene ID: 664763, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch73-130a3.4provided by ZNC
Official Full Name
si:ch73-130a3.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-141219-41
See related
Ensembl:ENSDARG00000056213 AllianceGenome:ZFIN:ZDB-GENE-141219-41
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:122991
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP6 (THAP domain containing 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch73-130a3.4 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (29854238..29861015)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30266916..30273870)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit I Neighboring gene taxilin alpha Neighboring gene karyopherin alpha 6 (importin alpha 7) Neighboring gene uncharacterized LOC137488528 Neighboring gene KH domain containing, RNA binding, signal transduction associated 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC122991

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC664763

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245063.2 → NP_001231992.2  uncharacterized protein LOC664763

    Status: VALIDATED

    Source sequence(s)
    CU633192
    UniProtKB/TrEMBL
    A0A8M1NYS7, F6P462

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    29854238..29861015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215292.1 → XP_068071393.1  uncharacterized protein LOC664763

    Related
    ENSDARP00000100340.3, ENSDART00000109729.4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials