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Gm14326 predicted gene 14326 [ Mus musculus (house mouse) ]

Gene ID: 665211, updated on 8-Feb-2024

Summary

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Official Symbol
Gm14326provided by MGI
Official Full Name
predicted gene 14326provided by MGI
Primary source
MGI:MGI:3709298
See related
Ensembl:ENSMUSG00000078862 AllianceGenome:MGI:3709298
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in cerebellum adult (RPKM 4.2), cortex adult (RPKM 4.2) and 25 other tissues See more
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Genomic context

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See Gm14326 in Genome Data Viewer
Location:
2 H4; 2 99.58 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (177577786..177599189, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (177935993..177957386, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S8, pseudogene 5 Neighboring gene STARR-seq mESC enhancer starr_06695 Neighboring gene zinc finger protein 1003 Neighboring gene zinc finger protein 972 Neighboring gene STARR-seq mESC enhancer starr_06696 Neighboring gene predicted gene 14428 Neighboring gene STARR-seq mESC enhancer starr_06697 Neighboring gene STARR-seq mESC enhancer starr_06698 Neighboring gene predicted gene, 40030

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
novel KRAB box and zinc finger, C2H2 type domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190302.2 → NP_001177231.1  novel KRAB box and zinc finger, C2H2 type domain containing protein isoform 1

    See identical proteins and their annotated locations for NP_001177231.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BX284639
    Consensus CDS
    CCDS50833.1
    UniProtKB/TrEMBL
    A2BFG5
    Related
    ENSMUSP00000104558.3, ENSMUST00000108930.9
    Conserved Domains (3) summary
    COG5048
    Location:129 → 543
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:161 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

  2. NM_001282028.1 → NP_001268957.1  novel KRAB box and zinc finger, C2H2 type domain containing protein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate 3' exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    BC079554
    Consensus CDS
    CCDS71210.1
    UniProtKB/TrEMBL
    A2BE16, A2BFG4
    Related
    ENSMUSP00000104560.2, ENSMUST00000108932.8
    Conserved Domains (2) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    pfam01352
    Location:4 → 43
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    177577786..177599189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251946.2 → XP_030107806.1  novel KRAB box and zinc finger, C2H2 type domain containing protein isoform X1

    UniProtKB/TrEMBL
    A2BFG5
    Conserved Domains (3) summary
    COG5048
    Location:129 → 543
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:161 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

RNA

  1. XR_003953684.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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