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Vmn2r28 vomeronasal 2, receptor 28 [ Mus musculus (house mouse) ]

Gene ID: 665255, updated on 11-Apr-2024

Summary

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Official Symbol
Vmn2r28provided by MGI
Official Full Name
vomeronasal 2, receptor 28provided by MGI
Primary source
MGI:MGI:3645468
See related
Ensembl:ENSMUSG00000066820 AllianceGenome:MGI:3645468
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG665255
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Vmn2r28 in Genome Data Viewer
Location:
7 A1; 7 3.17 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (5483455..5496850, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (5480456..5493851, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17954 Neighboring gene vomeronasal 1 receptor 59 Neighboring gene vomeronasal 2, receptor 37 pseudogene Neighboring gene STARR-seq mESC enhancer starr_17955 Neighboring gene STARR-seq mESC enhancer starr_17956 Neighboring gene vomeronasal 1 receptor 60 Neighboring gene STARR-seq mESC enhancer starr_17957 Neighboring gene vomeronasal 1 receptor, pseudogene 40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vomeronasal 2, receptor 28
Names
vomeronasal receptor Vmn2r28

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081405.1 → NP_001074874.1  vomeronasal 2, receptor 28 precursor

    Status: PROVISIONAL

    Source sequence(s)
    AC132281, AC148980
    Consensus CDS
    CCDS39748.1
    UniProtKB/TrEMBL
    A0A3B2WD73, L7N203
    Related
    ENSMUSP00000083477.6, ENSMUST00000086297.8
    Conserved Domains (4) summary
    pfam00003
    Location:599 → 833
    7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
    pfam01094
    Location:75 → 453
    ANF_receptor; Receptor family ligand binding region
    pfam07562
    Location:513 → 564
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:38 → 503
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    5483455..5496850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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