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A930005H10Rik RIKEN cDNA A930005H10 gene [ Mus musculus (house mouse) ]

Gene ID: 68161, updated on 22-Oct-2024

Summary

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Official Symbol
A930005H10Rikprovided by MGI
Official Full Name
RIKEN cDNA A930005H10 geneprovided by MGI
Primary source
MGI:MGI:1915411
See related
Ensembl:ENSMUSG00000054426 AllianceGenome:MGI:1915411
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in spleen adult (RPKM 11.8), mammary gland adult (RPKM 8.2) and 28 other tissues See more
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Genomic context

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See A930005H10Rik in Genome Data Viewer
Location:
3 G1; 3 50.13 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (115675227..115681779, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (115881578..115888130, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11211 Neighboring gene STARR-positive B cell enhancer ABC_E2096 Neighboring gene STARR-seq mESC enhancer starr_08763 Neighboring gene sphingosine-1-phosphate receptor 1 Neighboring gene predicted gene 9889 Neighboring gene STARR-positive B cell enhancer ABC_E7938 Neighboring gene STARR-positive B cell enhancer ABC_E11212 Neighboring gene STARR-seq mESC enhancer starr_08765 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:115518463-115518646 Neighboring gene STARR-seq mESC enhancer starr_08766 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:115591074-115591257 Neighboring gene diphthamide biosynthesis 5 Neighboring gene predicted gene, 54180 Neighboring gene solute carrier family 30 (zinc transporter), member 7 Neighboring gene E74-like factor 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015487.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and has an alternate splice site, as compared to variant 1.
    Source sequence(s)
    AK007373, AK020812, AW047335
    Related
    ENSMUST00000185681.3

  2. NR_027894.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) includes three exons.
    Source sequence(s)
    AW047335, BF019418
    Related
    ENSMUST00000188260.9

  3. NR_027895.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) is intronless and has an alternate 3' sequence, as compared to variant 1.
    Source sequence(s)
    AK081943, BB849893

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    115675227..115681779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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