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Rps13l1 ribosomal protein S13 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 683961, updated on 10-Jul-2024

Summary

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Official Symbol
Rps13l1provided by RGD
Official Full Name
ribosomal protein S13 like 1provided by RGD
Primary source
RGD:1596535
See related
EnsemblRapid:ENSRNOG00000048698 AllianceGenome:RGD:1596535
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
AABR07048031.1
Expression
Biased expression in Thymus (RPKM 2801.1), Spleen (RPKM 2569.4) and 9 other tissues See more
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Genomic context

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See Rps13l1 in Genome Data Viewer
Location:
5q22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (61253046..61253614)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (56457121..56457669)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (57652412..57658436)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-associated protein 2 Neighboring gene small nucleolar RNA SNORD121A Neighboring gene small nucleolar RNA, C/D box 121A Neighboring gene DDB1 and CUL4 associated factor 12 Neighboring gene uncharacterized LOC134486930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic β-cells. Milochau A, et al. FEBS Lett, 2014 Jun 27. PMID 24882364
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein uS15-like
Names
40S ribosomal protein S13-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    61253046..61253614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003749925.6 → XP_003749973.3  small ribosomal subunit protein uS15-like

    UniProtKB/TrEMBL
    A0A8L2QJT9, M0RCY2
    Related
    ENSRNOP00000067470.1, ENSRNOT00000073017.3
    Conserved Domains (1) summary
    PTZ00072
    Location:4 → 155
    PTZ00072; 40S ribosomal protein S13; Provisional
Nucleotide Protein Strain
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