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Cd209f CD209f antigen [ Mus musculus (house mouse) ]

Gene ID: 69142, updated on 19-Jun-2024

Summary

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Official Symbol
Cd209fprovided by MGI
Official Full Name
CD209f antigenprovided by MGI
Primary source
MGI:MGI:1916392
See related
Ensembl:ENSMUSG00000051906 AllianceGenome:MGI:1916392
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SIGNR8; 1810029C22Rik
Summary
Enables mannose binding activity. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in mammary gland adult (RPKM 34.5), subcutaneous fat pad adult (RPKM 12.8) and 4 other tissues See more
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Genomic context

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See Cd209f in Genome Data Viewer
Location:
8 A1.1; 8 1.92 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (4152784..4155838, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (4102784..4105838, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cell division cycle 42 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_20602 Neighboring gene STARR-seq mESC enhancer starr_20603 Neighboring gene axin interaction partner and dorsalization antagonist pseudogene Neighboring gene STARR-seq mESC enhancer starr_20605 Neighboring gene STARR-seq mESC enhancer starr_20606 Neighboring gene CD209g antigen Neighboring gene STARR-seq mESC enhancer starr_20608 Neighboring gene RIKEN cDNA 4932443L11 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:4162949-4163058 Neighboring gene STARR-positive B cell enhancer ABC_E355 Neighboring gene ecotropic viral integration site 5 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Widely divergent biochemical properties of the complete set of mouse DC-SIGN-related proteins. Powlesland AS, et al. J Biol Chem, 2006 Jul 21. PMID 16682406
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables D-mannose binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables carbohydrate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological process involved in interspecies interaction between organisms IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CD209f antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026956.2 → NP_081232.2  CD209f antigen

    See identical proteins and their annotated locations for NP_081232.2

    Status: VALIDATED

    Source sequence(s)
    AK007638, BC099497
    Consensus CDS
    CCDS52472.1
    UniProtKB/TrEMBL
    G3UVT9, Q7TSU6
    Related
    ENSMUSP00000116355.2, ENSMUST00000145007.8
    Conserved Domains (1) summary
    cd03590
    Location:127 → 246
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    4152784..4155838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508867.2 → XP_006508930.1  CD209f antigen isoform X1

    UniProtKB/TrEMBL
    Q80ZY1
    Conserved Domains (1) summary
    cd03590
    Location:127 → 246
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

  2. XM_006508868.4 → XP_006508931.1  CD209f antigen isoform X2

    UniProtKB/TrEMBL
    Q8CHZ4
    Related
    ENSMUST00000207294.2
    Conserved Domains (1) summary
    cl02432
    Location:127 → 171
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RNA

  1. XR_378666.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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