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Zfp33b zinc finger protein 33B [ Mus musculus (house mouse) ]

Gene ID: 69623, updated on 9-Dec-2024

Summary

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Official Symbol
Zfp33bprovided by MGI
Official Full Name
zinc finger protein 33Bprovided by MGI
Primary source
MGI:MGI:1916873
See related
Ensembl:ENSMUSG00000120166 AllianceGenome:MGI:1916873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310012P17Rik
Summary
Is expressed in early conceptus; inner cell mass; oocyte; and trophectoderm. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in testis adult (RPKM 1.4), CNS E18 (RPKM 1.3) and 24 other tissues See more
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Genomic context

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See Zfp33b in Genome Data Viewer
Location:
5 E5; 5 50.68 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (104718441..104734141)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (104570575..104584620)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13829 Neighboring gene STARR-seq mESC enhancer starr_13830 Neighboring gene polycystin 2, transient receptor potential cation channel Neighboring gene THO complex subunit 2-like Neighboring gene STARR-positive B cell enhancer ABC_E4770 Neighboring gene STARR-seq mESC enhancer starr_13832 Neighboring gene predicted gene, 54331 Neighboring gene NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene Neighboring gene predicted gene, 31255 Neighboring gene STARR-seq mESC enhancer starr_13833 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Yoshikawa T, et al. Gene Expr Patterns, 2006 Jan. PMID 16325481, Free PMC Article
  2. Transcriptome analysis of mouse stem cells and early embryos. Sharov AA, et al. PLoS Biol, 2003 Dec. PMID 14691545, Free PMC Article
  3. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  4. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Guo G, et al. Dev Cell, 2010 Apr 20. PMID 20412781
  5. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
zinc finger protein 33B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424317.1 → NP_001411246.1  zinc finger protein 33B

    Status: VALIDATED

    Source sequence(s)
    AC123687
    UniProtKB/TrEMBL
    A0A9L6KDG1
    Related
    ENSMUSP00000159605.1, ENSMUST00000242469.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    104718441..104734141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062871538.1 → XP_062727522.1  zinc finger protein 33B isoform X1

    UniProtKB/TrEMBL
    A0A9L6KDU1
    Related
    ENSMUSP00000159607.1, ENSMUST00000247219.1

  2. XM_062871540.1 → XP_062727524.1  zinc finger protein 33B isoform X2

  3. XM_062871539.1 → XP_062727523.1  zinc finger protein 33B isoform X2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001346671.1: Suppressed sequence

    Description
    NM_001346671.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_001346672.1: Suppressed sequence

    Description
    NM_001346672.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  3. NM_027142.1: Suppressed sequence

    Description
    NM_027142.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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