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Ssty2 spermiogenesis specific transcript on the Y 2 [ Mus musculus (house mouse) ]

Gene ID: 70009, updated on 8-Feb-2024

Summary

Official Symbol
Ssty2provided by MGI
Official Full Name
spermiogenesis specific transcript on the Y 2provided by MGI
Primary source
MGI:MGI:1917259
See related
Ensembl:ENSMUSG00000095302 AllianceGenome:MGI:1917259
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
pc11; 1700029H17Rik
Summary
Predicted to enable methylated histone binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See Ssty2 in Genome Data Viewer
Location:
Y; Y C3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (67057012..67059341, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (67045743..67048072, complement)

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 20933 Neighboring gene predicted gene, 20852 Neighboring gene predicted gene 28646 Neighboring gene predicted gene, 21114

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • MGC107175

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
spermiogenesis specific transcript on the Y 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023546.3NP_076035.3  spermiogenesis specific transcript on the Y 2

    See identical proteins and their annotated locations for NP_076035.3

    Status: VALIDATED

    Source sequence(s)
    AC137982, BC117086
    Consensus CDS
    CCDS85893.1
    UniProtKB/TrEMBL
    Q149W4, Q62456
    Related
    ENSMUSP00000139505.2, ENSMUST00000190565.2
    Conserved Domains (1) summary
    pfam02513
    Location:2170
    Spin-Ssty; Spin/Ssty Family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    67057012..67059341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)