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Speer5-ps1 spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1 [ Mus musculus (house mouse) ]

Gene ID: 70365, updated on 17-Aug-2024

Summary

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Official Symbol
Speer5-ps1provided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1provided by MGI
Primary source
MGI:MGI:1917615
See related
Ensembl:ENSMUSG00000091358 Ensembl:ENSMUSG00000121674 AllianceGenome:MGI:1917615
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPEER-5; Speer5-ps; 1700007C10Rik
Expression
Restricted expression toward testis adult (RPKM 2.3) See more
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Genomic context

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See Speer5-ps1 in Genome Data Viewer
Location:
10 B2; 10 23.24 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (44046443..44095581)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (44170447..44219585)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene preferentially expressed antigen in melanoma like 7 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2323 Neighboring gene coiled-coil domain containing 137 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26535 Neighboring gene STARR-seq mESC enhancer starr_26536 Neighboring gene STARR-positive B cell enhancer ABC_E9786 Neighboring gene predicted gene, 40637 Neighboring gene autophagy related 5 Neighboring gene STARR-positive B cell enhancer ABC_E10605 Neighboring gene STARR-seq mESC enhancer starr_26539 Neighboring gene predicted gene, 19229

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
  2. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
  3. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • sperm-associated glutamate (E)-rich protein 5, pseudogene
  • spermatogenic-associated glutamate (E)-rich protein 5, pseudogene

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001582.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AC153863, AK005695, BB679670
    Related
    ENSMUST00000169525.3

  2. NR_027506.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) is the shorter transcript. It lacks the 5' four exons but has an alternate 5' exon, compared to variant 1.
    Source sequence(s)
    BB679670, DV646842
    Related
    ENSMUST00000215938.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    44046443..44095581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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