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THBS1 thrombospondin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 705413, updated on 17-Aug-2024

Summary

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Official Symbol
THBS1provided by VGNC
Official Full Name
thrombospondin 1provided by VGNC
Primary source
VGNC:VGNC:78344
See related
Ensembl:ENSMMUG00000006035
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See THBS1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (15979849..15997008)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (15889415..15906828)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene chromosome 7 C15orf54 homolog Neighboring gene uncharacterized LOC106999140 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene cytochrome c oxidase subunit NDUFA4 pseudogene Neighboring gene uncharacterized LOC114679378

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    15979849..15997008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015141916.2 → XP_014997402.1  thrombospondin-1

    UniProtKB/TrEMBL
    F6WIY2, G7MWM2
    Related
    ENSMMUP00000007925.4, ENSMMUT00000008436.4
    Conserved Domains (11) summary
    smart00209
    Location:438 → 490
    TSP1; Thrombospondin type 1 repeats
    smart00210
    Location:26 → 221
    TSPN; Thrombospondin N-terminal -like domains
    sd00001
    Location:845 → 882
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:787 → 821
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:691 → 726
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00093
    Location:318 → 372
    VWC; von Willebrand factor type C domain
    pfam00090
    Location:383 → 428
    TSP_1; Thrombospondin type 1 domain
    pfam02412
    Location:846 → 882
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:972 → 1169
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:650 → 689
    EGF_3; EGF domain
    NF000535
    Location:691 → 891
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
Nucleotide Protein
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