U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

4933411E08Rik RIKEN cDNA 4933411E08 gene [ Mus musculus (house mouse) ]

Gene ID: 71067, updated on 9-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
4933411E08Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933411E08 geneprovided by MGI
Primary source
MGI:MGI:1918317
See related
Ensembl:ENSMUSG00000112500 AllianceGenome:MGI:1918317
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 4.1) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See 4933411E08Rik in Genome Data Viewer
Location:
10; 10 D2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (117761364..117784212)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (117925459..117948307)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40773 Neighboring gene predicted gene, 32552 Neighboring gene predicted gene, 32605 Neighboring gene STARR-positive B cell enhancer mm9_chr10:117346931-117347231 Neighboring gene STARR-positive B cell enhancer mm9_chr10:117347418-117347719 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:117385054-117385237 Neighboring gene STARR-positive B cell enhancer ABC_E2968 Neighboring gene STARR-seq mESC enhancer starr_28015 Neighboring gene predicted gene, 32663 Neighboring gene STARR-seq mESC enhancer starr_28016 Neighboring gene STARR-positive B cell enhancer ABC_E2969 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:117540267-117540559 Neighboring gene STARR-seq mESC enhancer starr_28018 Neighboring gene STARR-seq mESC enhancer starr_28021 Neighboring gene STARR-positive B cell enhancer ABC_E2341 Neighboring gene MDM1 nuclear protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045342.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK016769
    Related
    ENSMUST00000217950.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    117761364..117784212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.