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Slc35f2 solute carrier family 35, member F2 [ Mus musculus (house mouse) ]

Gene ID: 72022, updated on 2-Nov-2024

Summary

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Official Symbol
Slc35f2provided by MGI
Official Full Name
solute carrier family 35, member F2provided by MGI
Primary source
MGI:MGI:1919272
See related
Ensembl:ENSMUSG00000042195 AllianceGenome:MGI:1919272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1500009K05Rik
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is expressed in several structures, including alimentary system; central nervous system; early embryo; genitourinary system; and nose. Orthologous to human SLC35F2 (solute carrier family 35 member F2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in genital fat pad adult (RPKM 29.1), large intestine adult (RPKM 19.0) and 12 other tissues See more
Orthologs
human all
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Genomic context

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See Slc35f2 in Genome Data Viewer
Location:
9 A5.3; 9 29.12 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (53678733..53725445)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (53771433..53818161)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene cullin 5 Neighboring gene STARR-positive B cell enhancer ABC_E10546 Neighboring gene STARR-seq mESC enhancer starr_24147 Neighboring gene predicted gene 16124 Neighboring gene ribosomal protein S6, pseudogene 3 Neighboring gene STARR-positive B cell enhancer ABC_E1114 Neighboring gene RAB39, member RAS oncogene family Neighboring gene STARR-seq mESC enhancer starr_24150 Neighboring gene STARR-seq mESC enhancer starr_24156 Neighboring gene sarcolipin Neighboring gene SIVA1, apoptosis-inducing factor pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. PEG3 binds to H19-ICR as a transcriptional repressor. Ye A, et al. Epigenetics, 2016 Dec. PMID 27824289, Free PMC Article
  2. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
  3. Deterministic and stochastic allele specific gene expression in single mouse blastomeres. Tang F, et al. PLoS One, 2011. PMID 21731673, Free PMC Article
  4. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 35 member F2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028060.3 → NP_082336.3  solute carrier family 35 member F2

    See identical proteins and their annotated locations for NP_082336.3

    Status: VALIDATED

    Source sequence(s)
    AK005182, BB729203, CD551889, CD554029
    Consensus CDS
    CCDS40639.1
    UniProtKB/Swiss-Prot
    Q7TML3, Q9DB62
    Related
    ENSMUSP00000046528.9, ENSMUST00000048670.10
    Conserved Domains (3) summary
    pfam00892
    Location:196 → 331
    EamA; EamA-like transporter family
    pfam06027
    Location:35 → 334
    SLC35F; Solute carrier family 35
    cl23754
    Location:74 → 240
    EamA; EamA-like transporter family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    53678733..53725445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511461.5 → XP_006511524.1  solute carrier family 35 member F2 isoform X2

    Conserved Domains (1) summary
    pfam06027
    Location:48 → 347
    SLC35F; Solute carrier family 35

  2. XM_006511460.2 → XP_006511523.1  solute carrier family 35 member F2 isoform X1

    Conserved Domains (1) summary
    pfam06027
    Location:92 → 389
    SLC35F; Solute carrier family 35

  3. XM_006511462.4 → XP_006511525.1  solute carrier family 35 member F2 isoform X3

    Conserved Domains (1) summary
    pfam06027
    Location:1 → 287
    SLC35F; Solute carrier family 35
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7TML3.2 GenPept UniProtKB/Swiss-Prot:Q7TML3

Gene LinkOut

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