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LOC727751 golgin A2 pseudogene [ Homo sapiens (human) ]

Gene ID: 727751, updated on 17-Jun-2024

Summary

Gene symbol
LOC727751
Gene description
golgin A2 pseudogene
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC727751 in Genome Data Viewer
Location:
15q25.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (85203449..85234808, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (82955645..82987004, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (82944750..82976258)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene NIFK pseudogene 8 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:85741901-85742401 Neighboring gene golgin A2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:85750569-85751070 Neighboring gene RNA, 7SL, cytoplasmic 428, pseudogene Neighboring gene uncharacterized LOC105370948 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:85773184-85773406 Neighboring gene golgin A6 family like 3, pseudogene Neighboring gene dynamin 1 pseudogene 45

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102747.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC011295, AC126339, AK309746
  2. NR_102748.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' exon, at the 3' exon, and at an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC011295, AC126339, AK307285

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    85203449..85234808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    65105..96613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    82955645..82987004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)