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GOLGA6L6 golgin A6 family like 6 (gene/pseudogene) [ Homo sapiens (human) ]

Gene ID: 727832, updated on 25-Sep-2024

Summary

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Official Symbol
GOLGA6L6provided by HGNC
Official Full Name
golgin A6 family like 6 (gene/pseudogene)provided by HGNC
Primary source
HGNC:HGNC:37225
See related
Ensembl:ENSG00000277322 AllianceGenome:HGNC:37225
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.1) See more
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Genomic context

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See GOLGA6L6 in Genome Data Viewer
Location:
15q11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (20531856..20541800, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (18443674..18453636, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (20737094..20747114, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene HERC2 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:20707920-20708594 Neighboring gene E3 ubiquitin-protein ligase HERC2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:20736451-20736951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:20738609-20739110 Neighboring gene MPHOSPH10 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:20775869-20776369 Neighboring gene golgin A8 family member C, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 759, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer. Vichas A, et al. Nat Commun, 2021 Aug 9. PMID 34373451, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ36131

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 6
Names
golgi autoantigen, golgin subfamily a, 6-like 6
putative golgin subfamily A member 6-like protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145004.2 → NP_001138476.2  golgin subfamily A member 6-like protein 6

    Status: VALIDATED

    Source sequence(s)
    AC023310
    Consensus CDS
    CCDS45184.1
    UniProtKB/Swiss-Prot
    A8MZA4, D3YTC0
    Related
    ENSP00000480376.1, ENST00000619213.1
    Conserved Domains (1) summary
    pfam13868
    Location:367 → 713
    TPH; Trichohyalin-plectin-homology domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    20531856..20541800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    773566..783509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    18443674..18453636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MZA4.4 GenPept UniProtKB/Swiss-Prot:A8MZA4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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