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GAGE12B G antigen 12B [ Homo sapiens (human) ]

Gene ID: 729428, updated on 17-Sep-2024

Summary

Official Symbol
GAGE12Bprovided by HGNC
Official Full Name
G antigen 12Bprovided by HGNC
Primary source
HGNC:HGNC:26779
See related
Ensembl:ENSG00000275113 AllianceGenome:HGNC:26779
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GAGE-12B
Expression
Restricted expression toward testis (RPKM 183.7) See more
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Genomic context

See GAGE12B in Genome Data Viewer
Location:
Xp11.23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (49341164..49529982)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (48752961..48760273)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (49235691..49294585)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene G antigen 12J Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:49216999-49217663 Neighboring gene G antigen 13 Neighboring gene G antigen 12C Neighboring gene G antigen 12D

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127345.3NP_001120817.2  G antigen 12B/C/D/E

    Status: VALIDATED

    Source sequence(s)
    AC142497, AC233302
    UniProtKB/Swiss-Prot
    B7ZM13, O76087, P0CL80, P0CL81, P0CL82, Q4V324, Q66I50
    UniProtKB/TrEMBL
    B7ZVY3
    Related
    ENSP00000478568.1, ENST00000621907.1
    Conserved Domains (1) summary
    pfam05831
    Location:1111
    GAGE; GAGE protein

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    49341164..49529982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    48752961..48760273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)