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GOLGA2P6 GOLGA2 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 729668, updated on 17-Sep-2024

Summary

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Official Symbol
GOLGA2P6provided by HGNC
Official Full Name
GOLGA2 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:44948
See related
AllianceGenome:HGNC:44948
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 18.0) See more
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Genomic context

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See GOLGA2P6 in Genome Data Viewer
Location:
10p11.23
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (30364327..30371907, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (30395338..30402916, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (30653256..30660836, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene mitochondrial poly(A) polymerase Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30636687-30637187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3204 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3206 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3207 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30648605-30649209 Neighboring gene dynamin 1 pseudogene 17 Neighboring gene RNA, 7SL, cytoplasmic 241, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:30661753-30662712 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:30662713-30663672 Neighboring gene microRNA 7162 Neighboring gene NIFK pseudogene 1 Neighboring gene cyclin D3 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • golgi autoantigen, golgin subfamily a, 6 pseudogene
  • golgin A2 pseudogene 6
  • golgin A6 family, member A pseudogene

Clone Names

  • FLJ40533, FLJ43751, DKFZp434I138

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120609.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK125739, AL161651

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    30364327..30371907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    30395338..30402916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_003524.1: Suppressed sequence

    Description
    NR_003524.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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