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Lce1a2 late cornified envelope 1A2 [ Mus musculus (house mouse) ]

Gene ID: 73722, updated on 9-Aug-2024

Summary

Official Symbol
Lce1a2provided by MGI
Official Full Name
late cornified envelope 1A2provided by MGI
Primary source
MGI:MGI:1920972
See related
Ensembl:ENSMUSG00000068890 AllianceGenome:MGI:1920972
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sprrl2; 1110004E04Rik
Summary
Enables identical protein binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward stomach adult (RPKM 103.5) See more
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Genomic context

See Lce1a2 in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92575920..92577622, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92668613..92670315, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 1B Neighboring gene ribosomal protein L13, pseudogene 4 Neighboring gene late cornified envelope 1C Neighboring gene STARR-seq mESC enhancer starr_08313 Neighboring gene late cornified envelope 1D

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
late cornified envelope 1A2
Names
small proline rich-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028625.2NP_082901.1  late cornified envelope 1A2

    See identical proteins and their annotated locations for NP_082901.1

    Status: VALIDATED

    Source sequence(s)
    AK003412
    Consensus CDS
    CCDS17564.1
    UniProtKB/TrEMBL
    Q9D1K4
    Related
    ENSMUSP00000029530.6, ENSMUST00000029530.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92575920..92577622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)