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Scpep1os serine carboxypeptidase 1, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 73921, updated on 17-Aug-2024

Summary

Official Symbol
Scpep1osprovided by MGI
Official Full Name
serine carboxypeptidase 1, opposite strandprovided by MGI
Primary source
MGI:MGI:1921171
See related
Ensembl:ENSMUSG00000087338 AllianceGenome:MGI:1921171
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930405P13Rik
Expression
Broad expression in placenta adult (RPKM 10.1), bladder adult (RPKM 4.6) and 19 other tissues See more
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Genomic context

See Scpep1os in Genome Data Viewer
Location:
11 C; 11 54.34 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88796754..88826887)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88905928..88936061)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene A kinase anchor protein 1 Neighboring gene RIKEN cDNA 4930556N13 gene Neighboring gene STARR-positive B cell enhancer ABC_E7042 Neighboring gene predicted gene, 23507 Neighboring gene STARR-seq mESC enhancer starr_30370 Neighboring gene serine carboxypeptidase 1 Neighboring gene STARR-seq mESC enhancer starr_30374 Neighboring gene STARR-positive B cell enhancer ABC_E3993 Neighboring gene STARR-seq mESC enhancer starr_30376 Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30377 Neighboring gene STARR-positive B cell enhancer ABC_E10705 Neighboring gene elongin B-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045955.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK015102
    Related
    ENSMUST00000139592.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    88796754..88826887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)