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Tex55 testis expressed 55 [ Mus musculus (house mouse) ]

Gene ID: 74663, updated on 9-Aug-2024

Summary

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Official Symbol
Tex55provided by MGI
Official Full Name
testis expressed 55provided by MGI
Primary source
MGI:MGI:1921913
See related
Ensembl:ENSMUSG00000022798 AllianceGenome:MGI:1921913
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TSCPA; 4930435E12Rik
Summary
Located in nucleus. Orthologous to human TEX55 (testis expressed 55). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 28.2) See more
Orthologs
human all
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Genomic context

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See Tex55 in Genome Data Viewer
Location:
16 26.87 cM; 16 B4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (38632566..38649134, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (38812204..38828772, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 Neighboring gene RNA binding motif protein 39 pseudogene Neighboring gene uroplakin 1B Neighboring gene STARR-seq mESC enhancer starr_40835 Neighboring gene STARR-seq mESC enhancer starr_40836 Neighboring gene predicted gene 15802 Neighboring gene immunoglobulin superfamily, member 11 Neighboring gene predicted gene, 22500

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Tex55 encodes a conserved putative A-kinase anchoring protein dispensable for male fertility in the mouse. Jamin SP, et al. Biol Reprod, 2021 Apr 1. PMID 33458765
  2. Expression profile of a novel germ cell-specific gene, TSCPA, in mice and human. Yu Z, et al. J Huazhong Univ Sci Technolog Med Sci, 2009 Oct. PMID 19821082
  3. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Tex55 encodes a conserved putative A-kinase anchoring protein dispensable for male fertility in the mouse.
    Title: Tex55 encodes a conserved putative A-kinase anchoring protein dispensable for male fertility in the mouse.
  2. TSCPA was expressed specifically in mouse and human testis and might play an important role in spermatogenesis.
    Title: Expression profile of a novel germ cell-specific gene, TSCPA, in mice and human.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
testis-specific expressed protein 55
Names
testis-specific conserved, cAMP dependent type PK anchoring protein
testis-specific conserved, cAMP-dependent type II PK-anchoring protein
uncharacterized protein C3orf30 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418951.1 → NP_001405880.1  testis-specific expressed protein 55 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT009576

  2. NM_029042.2 → NP_083318.1  testis-specific expressed protein 55 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT009576
    Consensus CDS
    CCDS49850.1
    UniProtKB/Swiss-Prot
    A4QMY3, A6X8Z9, Q8C5T0
    Related
    ENSMUSP00000113120.2, ENSMUST00000122078.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    38632566..38649134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522676.2 → XP_006522739.1  testis-specific expressed protein 55 isoform X2

    Conserved Domains (1) summary
    pfam17819
    Location:230 → 346
    DUF5582; Family of unknown function (DUF5582)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6X8Z9.1 GenPept UniProtKB/Swiss-Prot:A6X8Z9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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