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0610040F04Rik RIKEN cDNA 0610040F04 gene [ Mus musculus (house mouse) ]

Gene ID: 75394, updated on 22-Oct-2024

Summary

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Official Symbol
0610040F04Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610040F04 geneprovided by MGI
Primary source
MGI:MGI:1922644
See related
Ensembl:ENSMUSG00000087341 AllianceGenome:MGI:1922644
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in genital fat pad adult (RPKM 3.0), adrenal adult (RPKM 2.4) and 22 other tissues See more
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Genomic context

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See 0610040F04Rik in Genome Data Viewer
Location:
6 E2; 6 49.81 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (108553997..108637895, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (108577036..108660934, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor 1 Neighboring gene STARR-positive B cell enhancer mm9_chr6:108499461-108499762 Neighboring gene STARR-positive B cell enhancer ABC_E4852 Neighboring gene STARR-seq mESC enhancer starr_16963 Neighboring gene predicted gene, 44040 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr6:108580835-108581135 Neighboring gene STARR-positive B cell enhancer mm9_chr6:108611576-108611876 Neighboring gene basic helix-loop-helix family, member e40 Neighboring gene STARR-positive B cell enhancer ABC_E1705 Neighboring gene STARR-seq mESC enhancer starr_16978 Neighboring gene predicted gene, 35359 Neighboring gene STARR-positive B cell enhancer ABC_E8121 Neighboring gene STARR-positive B cell enhancer ABC_E6466 Neighboring gene predicted gene, 51409 Neighboring gene ADP-ribosylation factor-like 8B Neighboring gene predicted gene, 35417

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040757.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' terminal exon and a different 3' exon structure, compared to variant 1.
    Source sequence(s)
    AC153593
    Related
    ENSMUST00000339049.1

  2. NR_104577.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC156506, AK039720, AW492777
    Related
    ENSMUST00000137478.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    108553997..108637895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_040758.1: Suppressed sequence

    Description
    NR_040758.1: This RefSeq was permanently suppressed because it is redundant with a public RefSeq (NR_104577.1).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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