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1700099I09Rik RIKEN cDNA 1700099I09 gene [ Mus musculus (house mouse) ]

Gene ID: 76624, updated on 22-Oct-2024

Summary

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Official Symbol
1700099I09Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700099I09 geneprovided by MGI
Primary source
MGI:MGI:1923874
See related
Ensembl:ENSMUSG00000091906 AllianceGenome:MGI:1923874
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 5.9), bladder adult (RPKM 1.3) and 10 other tissues See more
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Genomic context

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See 1700099I09Rik in Genome Data Viewer
Location:
13 D1; 13 54.94 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (102896763..102898404)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (102760255..102761896)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr13:103468634-103468935 Neighboring gene STARR-positive B cell enhancer ABC_E7271 Neighboring gene STARR-positive B cell enhancer ABC_E1887 Neighboring gene STARR-positive B cell enhancer ABC_E7272 Neighboring gene STARR-positive B cell enhancer ABC_E10811 Neighboring gene predicted gene, 41046 Neighboring gene STARR-seq mESC enhancer starr_35508 Neighboring gene STARR-seq mESC enhancer starr_35509 Neighboring gene STARR-positive B cell enhancer ABC_E3097 Neighboring gene CD180 antigen Neighboring gene microtubule associated serine/threonine kinase family member 4 Neighboring gene predicted gene 17160 Neighboring gene STARR-seq mESC enhancer starr_35511 Neighboring gene STARR-seq mESC enhancer starr_35515 Neighboring gene STARR-positive B cell enhancer ABC_E3098 Neighboring gene predicted gene, 30106

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130171.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC112791, AK007100, CN843001
    Related
    ENSMUST00000167834.3

  2. NR_130318.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon and uses an alternate splice site in the 3' terminal exon resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AC112791, AK007100, CN843001
    Related
    ENSMUST00000171722.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    102896763..102898404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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