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AU019990 expressed sequence AU019990 [ Mus musculus (house mouse) ]

Gene ID: 767814, updated on 17-Aug-2024

Summary

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Official Symbol
AU019990provided by MGI
Official Full Name
expressed sequence AU019990provided by MGI
Primary source
MGI:MGI:3034641
See related
Ensembl:ENSMUSG00000074783 AllianceGenome:MGI:3034641
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See AU019990 in Genome Data Viewer
Location:
2 F2; 2 64.74 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (132440116..132494987)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (132598196..132653067)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700026D11 gene Neighboring gene STARR-positive B cell enhancer ABC_E10150 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132338174-132338621 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132339740-132339927 Neighboring gene STARR-positive B cell enhancer ABC_E4500 Neighboring gene glycerophosphocholine phosphodiesterase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132433520-132433703 Neighboring gene STARR-seq mESC enhancer starr_05747 Neighboring gene ribosomal protein L23A, pseudogene 4 Neighboring gene ubiquitin-conjugating enzyme E2S pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033468.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK166556
    Related
    ENSMUST00000153028.8

  2. NR_033469.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks internal two exons and has a longer 5' exon and an alternate 3' exon, as compared to variant 1.
    Source sequence(s)
    AA414212, AK135901, BB729657, BG069619

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    132440116..132494987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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