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4930583I09Rik RIKEN cDNA 4930583I09 gene [ Mus musculus (house mouse) ]

Gene ID: 78057, updated on 27-Nov-2024

Summary

Official Symbol
4930583I09Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930583I09 geneprovided by MGI
Primary source
MGI:MGI:1925307
See related
Ensembl:ENSMUSG00000024088 AllianceGenome:MGI:1925307
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

See 4930583I09Rik in Genome Data Viewer
Location:
17 E1.1; 17 34.32 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (65139519..65143066, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (64832524..64836071, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene mannosidase 2, alpha 1 Neighboring gene STARR-positive B cell enhancer mm9_chr17:65017795-65018096 Neighboring gene STARR-positive B cell enhancer ABC_E11649 Neighboring gene STARR-positive B cell enhancer ABC_E2498 Neighboring gene STARR-seq mESC enhancer starr_42996 Neighboring gene down-regulated in hepatocellular carcinoma Neighboring gene STARR-seq mESC enhancer starr_42997 Neighboring gene STARR-seq mESC enhancer starr_42998 Neighboring gene predicted gene 4701 Neighboring gene STARR-seq mESC enhancer starr_42999 Neighboring gene predicted gene, 25344

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC78057

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030031.1NP_084307.1  uncharacterized protein LOC78057

    Status: VALIDATED

    Source sequence(s)
    BY715987
    Consensus CDS
    CCDS84328.1
    UniProtKB/TrEMBL
    Q9D2E3
    Related
    ENSMUSP00000024896.4, ENSMUST00000024896.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    65139519..65143066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)