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setd9 SET domain containing 9 [ Danio rerio (zebrafish) ]

Gene ID: 793111, updated on 4-Jan-2025

Summary

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Official Symbol
setd9provided by ZNC
Official Full Name
SET domain containing 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-120727-15
See related
AllianceGenome:ZFIN:ZDB-GENE-120727-15
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human SETD9 (SET domain containing 9). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See setd9 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (2684039..2694322)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (2656869..2667151)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) ligand 27b Neighboring gene pyridoxal (pyridoxine, vitamin B6) phosphatase Neighboring gene mesoderm induction early response 1, family member 3 a Neighboring gene G protein-coupled receptor kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The Kdm/Kmt gene families in the self-fertilizing mangrove rivulus fish, Kryptolebias marmoratus, suggest involvement of histone methylation machinery in development and reproduction. Fellous A, et al. Gene, 2019 Mar 1. PMID 30458291
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
SET domain-containing protein 9
Names
unm_hu7858

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    2684039..2694322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001332769.6 → XP_001332805.2  SET domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PRU1
    Conserved Domains (1) summary
    pfam00856
    Location:250 → 283
    SET; SET domain

  2. XM_009305071.4 → XP_009303346.1  SET domain-containing protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A8M3BCS1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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