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si:dkey-234h16.7 si:dkey-234h16.7 [ Danio rerio (zebrafish) ]

Gene ID: 794145, updated on 28-Oct-2024

Summary

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Official Symbol
si:dkey-234h16.7provided by ZNC
Official Full Name
si:dkey-234h16.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-060601-3
See related
Ensembl:ENSDARG00000095754 AllianceGenome:ZFIN:ZDB-GENE-060601-3
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

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See si:dkey-234h16.7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (19961988..19963532, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (19458179..19459775, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase interacting ArfGAP 2a Neighboring gene ankyrin repeat domain 13A Neighboring gene solute carrier family 6 member 4b Neighboring gene small G protein signaling modulator 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish mutant dreammist implicates sodium homeostasis in sleep regulation. Barlow IL, et al. Elife, 2023 Aug 7. PMID 37548652, Free PMC Article
  2. Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants. White RJ, et al. Elife, 2022 Feb 17. PMID 35175196, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170198.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX323811
    Related
    ENSDART00000148146.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    19961988..19963532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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